Cis- acting element

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August undefined, 2024

WebSubmitting a sequence to a program which will look for transcription sites known by PlantCARE. PlantCARE, a database of plant cis-acting regulatory elements and a portal to tools for in silico analysis of promoter sequences. Magali Lescot, Patrice D hais, Gert Thijs, Kathleen Marchal, Yves Moreau, Yves Van de Peer, Pierre Rouz and Stephane ... Web1 day ago · Thereafter, cis-acting elements of LuF5H gene promoters were analyzed using TBtools ; then, the 2.0 kb upstream region of the LuF5H gene’s protein-coding sequence (CDS) was extracted from the flax genome using the TBtools and saved as a FASTA file.

PlantCARE, a database of plant promoters and their cis-acting ...

WebApr 20, 2024 · In order to determine the contribution of cis-acting and trans-acting regulatory pathways on gene expression divergence in the brain, we utilized the C57Bl and CAST/EiJ mice models, which exhibit ... WebMar 21, 2024 · The presence of different cis-acting elements in promoters of genes might imply that the functions of these genes were different. To explore the cis-acting elements in the promoters of EIN3/EIL genes, a … florian clever cleversoft

Estrogen induction of the cyclin D1 promoter: Involvement of a ... - PNAS

WebIn Arabidopsis, the induction of a dehydration-responsive gene, rd22, is mediated by abscisic acid (ABA). We reported previously that MYC and MYB recognition sites in the rd22 promoter region function as cis-acting elements in the drought- and ABA-induced gene expression of rd22. bHLH- and MYB-related transcription factors, rd22BP1 (renamed … WebDec 20, 2024 · Abstract. RNA molecules are a source of phenotypic diversity and an operating system that connects multiple genetic and metabolic processes in the cell. A dysregulated RNA network is a common feature of cancer. Aberrant expression of long non-coding RNA (lncRNA), micro RNA (miRNA), and circular RNA (circRNA) in tumors … florian conrad bayreuth

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Trans-regulatory element - Wikipedia

WebBaker S, Wilhelm K, Thomashow H: The 5′ region of A. thaliana cor15a has cis-acting elements that confer cold-, drought-, and ABA-regulated gene expression.Plant Mol Biol 24: 701–713 (1994). PubMed Google Scholar . Bernhard WR, Thomas S, Botella J, Somerville CR: Isolation of a cDNA clone for spinach lipid transfer protein and evidence that the … WebJul 15, 2024 · Among the cis-acting elements, the pairing of intron complementary sequences (Alu elements) and the binding of splice sites (PAS, UGUA, and GGT-rich) … great summer appetizersWebThe _____ is a cis-acting element that binds trans-acting DNA-binding proteins. A. promoter B. enhancer C. promter-proximal element D. GC-rich box E. all of the above. … florian colas olivier dussopt mari

"WebSep 6, 2016 · A 360-bp fragment was sufficient to activate GUS expression. The P-1040 region had less GUS activity than the P-720 region, suggesting that the 320-bp region from nucleotide -720 to -1040 might include a cis-element acting as a silencer. Interestingly, an auxin-responsive cis-acting element (TGA-element) was uncovered in the promoter. " - Cis- acting element

Cis- acting element

Cis - and trans -regulations of pre-mRNA splicing by RNA ... - Nature

WebApr 7, 2024 · To analyze the cis-acting regulatory elements of BvSUTs, the online program PlantCARE was used to determine the structure of the promoter sequence within the SUT genome (assuming a length of approximately 2 kb upstream of the start codon). This analysis included cis-regulatory elements involved in endosperm expression, cis-acting … WebMar 1, 2014 · Linear models depicting gene promoters (Fig. 1) are often simple representations of the contributing cis-acting elements positioned upstream of the transcriptional start site of a gene.However, in vivo regulation of transcription is more dynamic and portrays an augmented level of complexity. The 3-dimensional organization …

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WebAug 31, 2005 · The 20 motifs with the highest specificity in the selected set were analyzed in more detail. Of these 20 motifs, 15 showed a very high or complete homology to the sequences of known cis-acting elements. These cis-acting elements are regulated by light, auxin, and abscisic acid, and confer specific expression in sink organs such as … Webcis. [ sis] ( L.) 1. in organic chemistry, having certain atoms or radicals on the same side. 2. in genetics, denoting two or more loci, especially pseudoalleles, occurring on the same …

WebFeb 7, 2024 · Since very few canonical cis-acting elements (5′ splice site (5′ss), 3′ss, and BPS) are affected by editing 27, we believe that ADAR proteins may regulate splicing through other mechanisms ... WebCis-regulatory elements (CREs) or Cis-regulatory modules (CRMs) are regions of non-coding DNA which regulate the transcription of neighboring genes. ... An example of a cis-acting regulatory sequence is the operator in the lac operon. This DNA sequence is bound by the lac repressor, which, in turn, prevents transcription of the adjacent genes ...

WebView the full answer. Step 2/2. Final answer. Transcribed image text: A bacteriophage typically has a higher mutation rate than its hosts. True False Neither Question 2 P BAD … WebA cis -acting element for the sulfur response is reported for the Arabidopsis SULTR1;1 sulfate transporter gene ( Maruyama-Nakashita et al., 2005 ). The sulfur-responsive …

WebTo confirm this cis-acting element in vivo, we transiently introduced this element one or five times tandemly repeated sequence with 35S minimal promoter and green fluorescent protein reporter together with or without ART1 gene in the tobacco (Nicotiana tabacum) mesophyll protoplasts. The results showed that the expression of green fluorescent ...

WebCis-acting elements - DNA sequences in the vicinity of the structural portion of a gene that are required for gene expression As we have mentioned several genes seem to be … florian cloud armstrongWebDec 5, 2024 · In most cases, complex interactions between cis-regulatory sequences and trans-acting factors control gene expression [3, 4]. Cis- and trans-regulatory elements are thought to vary based on key genetic and evolutionary properties [5, 6]. In diploid individuals, cis-regulatory elements regulate gene expression in an allele-specific manner. florian collinet bskWebCis-acting replication elements bring together the 5′ and 3′ ends during replication of positive-sense single-stranded RNA viruses (for example Picornavirus, Flavivirus, … florian companies in raleigh ncWebACGT-containing ABA response elements (ABREs) have been functionally identified in the promoters of various genes. In addition, single copies of ABRE have been found to … florian cooper brentwood schoolWebSep 28, 1999 · Upon activation by hormone binding, the receptor interacts specifically with a cis-acting DNA sequence called the estrogen response element (ERE), which usually is located upstream from the promoter and displays enhancer properties (7, 8). This interaction rapidly activates the transcription of estrogen-responsive genes. florian clyde synchronkarteiWebAug 1, 2024 · Cis acting element analysis. Cis acting elements located upstream of the transcription initiation codon do not code for proteins, but can affect gene expression. 1500 bp upstream of the start codon of OSCA genes were obtained with UGENE software, and cis acting elements related to stress contained in them were identified and analyzed … great summer beach readsWeb顺式作用元件（cis-actingelement）存在于基因旁侧序列中能影响基因表达的序列，它们的作用是参与基因表达的调控，本身不编码任何蛋白质，仅仅提供一个作用位点，要与反 … florian colas olivier dussopt mariage